From 17742a6c8447723bdc6eb07f74c57b5e8de89bb8 Mon Sep 17 00:00:00 2001
From: root <2277486684@qq.com>
Date: Thu, 13 Nov 2025 20:34:06 +0800
Subject: [PATCH] =?UTF-8?q?=E4=BF=AE=E6=94=B9=E4=BD=BF=E7=94=A8hpckit,?=
 =?UTF-8?q?=E4=BF=AE=E6=94=B9=E4=B8=8B=E8=BD=BD=E9=93=BE=E6=8E=A5?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .../hisat/0.1.6/data.hisat.arm.cpu.config     | 44 ++++++++-----------
 1 file changed, 19 insertions(+), 25 deletions(-)

diff --git a/templates/hisat/0.1.6/data.hisat.arm.cpu.config b/templates/hisat/0.1.6/data.hisat.arm.cpu.config
index 2390611d..317fdbe0 100644
--- a/templates/hisat/0.1.6/data.hisat.arm.cpu.config
+++ b/templates/hisat/0.1.6/data.hisat.arm.cpu.config
@@ -2,45 +2,38 @@
 11.11.11.11
 
 [DOWNLOAD]
-hisat/0.1.6 https://gitee.com/ye-jianbang/hpcrunner/raw/master/rongqi/hisat-0.1.6-beta-source.zip
-sse2neon/master https://gitee.com/ye-jianbang/hpcrunner/raw/master/rongqi/sse2neon.h
+hisat/0.1.6 https://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.6-beta-source.zip
+sse2neon https://raw.githubusercontent.com/DLTcollab/sse2neon/refs/heads/master/sse2neon.h
 
 [DEPENDENCY]
 module purge
-module use /hpcrunner/HPCKit/latest/modulefiles
-module add bisheng/bisheng
-module add bisheng/hmpi/hmpi
-module add bisheng/kml/kblas
-module add bisheng/kml/kspblas
-module add bisheng/kml/kvml
-module add bisheng/kml/kml
+module use software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module add bisheng/compiler${BISHENG_VERSION}
+module add bisheng/hmpi${HMPI_VERSION}
+module add bisheng/kml25.1.0
+
+unzip ${JARVIS_DOWNLOAD}/hisat-0.1.6-beta-source.zip -d ${JARVIS_ROOT}/software/apps
 
 [ENV]
 module purge
-module use /hpcrunner/HPCKit/latest/modulefiles
-module add bisheng/bisheng
-module add bisheng/hmpi/hmpi
-module add bisheng/kml/kblas
-module add bisheng/kml/kspblas
-module add bisheng/kml/kvml
-module add bisheng/kml/kml
-export NO_TBB=1
+module use software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module add bisheng/compiler${BISHENG_VERSION}
+module add bisheng/hmpi${HMPI_VERSION}
+module add bisheng/kml25.1.0
+
 export POPCNT_CAPABILITY=0
-export PATH=/hpcrunner/tmp/hisat-0.1.6-beta:$PATH
+export PATH=${JARVIS_ROOT}/software/apps/hisat-0.1.6-beta:$PATH
 
 [APP]
 app_name = hisat
-build_dir = 
-binary_dir = 
+build_dir = software/apps/hisat-0.1.6-beta
+binary_dir = software/apps/hisat-0.1.6-beta
 case_dir =
 
 [BUILD]
-cd ${JARVIS_ROOT}/tmp
 rm -rf hisat-0.1.6-beta
-unzip ${JARVIS_DOWNLOAD}/hisat-0.1.6-beta-source.zip
-cd hisat-0.1.6-beta
 cp ${JARVIS_DOWNLOAD}/sse2neon.h .
-sed -i "23c INC = -I$PWD" Makefile 
+sed -i "23c INC = -I$PWD" Makefile
 sed -i "26c CC = clang" Makefile
 sed -i "27c CPP = clang++" Makefile
 sed -i "141s/x86_64/aarch64/g" Makefile
@@ -56,7 +49,7 @@ sed -i "1252s/0/(const char*)0/g" aligner_result.cpp
 make -j
 
 [CLEAN]
-cd ${JARVIS_ROOT}/tmp
+cd ${JARVIS_ROOT}/software/apps
 cd hisat-0.1.6-beta
 make clean
 
@@ -65,3 +58,4 @@ run =
 binary =
 nodes = 1
 
+
-- 
Gitee